PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000150153
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family E2F/DP
Protein Properties Length: 497aa    MW: 54906.8 Da    PI: 6.8259
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000150153genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP60.33.1e-192563162771
        E2F_TDP  27 lnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                    ++eva+eLv+e                 d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg
  MDP0000150153 256 ISEVADELVAEfadpsnavtspdqqqqdDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 316
                    579*************************************************.*******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013725.0E-16235316IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-28256321IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023199.9E-16256316IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.35E-12256317IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144581.73E-42321430IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440744.97E-40322441No hitNo description
SMARTSM011382.7E-67323492IPR014889Transcription factor DP, C-terminal
PfamPF087811.3E-38324442IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MGTRSQQQPG RERTGQDDDD MAGGQSVSMS GSVGSPSSRS EQTMATPVGD NSFLRLNHPD  60
VHGDDAGSQG AVGDSFTALV KLLLNSSKKK KRGQRAVAGD KNGRGLRQFS MKGASLIAFV  120
PYLISLLHSV FPTKKVVEFN CLCIALKGWT LLLFLSMVIL RLPDCLILSC SCPVCEKVES  180
KGRTTYNEVG WFLQVTEVGY CSIHQGLVIN KFGFFFSSNH LTCVSACLVL NKGVAYSLVL  240
RHMWMNDLVA TGGGIISEVA DELVAEFADP SNAVTSPDQQ QQDDEKNIRR RVYDALNVLM  300
AMDIISKDKK EIQWKGLPRT SLNDIEELKT ERMGLRNRIE KKAAYLQELE EQYVGLQNLI  360
QRNEQLYHSG DAPNGGVALP FILVQASFLL KTRPHATVEV EISEDMQLVH FDFNSTPFEL  420
HDDNYVLKAM KFCNRQQGDD ATQNLIVDGG EGCSMSGMYQ PQIPLSSMLN TAIRPPPMSP  480
PLPGILKARV KHEHHGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B1e-182403211293PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFQ3817577e-39FQ381757.1 Vitis vinifera clone SS0ABG85YD15.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008376906.11e-160PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-101DPB_ARATH; Transcription factor-like protein DPB
TrEMBLM5XJG41e-147M5XJG4_PRUPE; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.21e-102Transcription factor DP